Last updated: 2020-02-03

Checks: 1 1

Knit directory: HHVtransmission/

This reproducible R Markdown analysis was created with workflowr (version 1.4.0). The Checks tab describes the reproducibility checks that were applied when the results were created. The Past versions tab lists the development history.

R Markdown file: uncommitted changes

The R Markdown file has unstaged changes. To know which version of the R Markdown file created these results, you’ll want to first commit it to the Git repo. If you’re still working on the analysis, you can ignore this warning. When you’re finished, you can run wflow_publish to commit the R Markdown file and build the HTML.

Repository version: 67254bc

Great! You are using Git for version control. Tracking code development and connecting the code version to the results is critical for reproducibility. The version displayed above was the version of the Git repository at the time these results were generated.

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Ignored files:
    Ignored:    .DS_Store
    Ignored:    .Rhistory
    Ignored:    .Rproj.user/
    Ignored:    analysis/.DS_Store
    Ignored:    analysis/.Rhistory
    Ignored:    data/.DS_Store
    Ignored:    docs/.DS_Store
    Ignored:    docs/figure/.DS_Store
    Ignored:    output/.DS_Store
    Ignored:    output/preprocess-model-data/.DS_Store

Untracked files:
    Untracked:  data/tmp/

Unstaged changes:
    Modified:   analysis/_site.yml
    Modified:   analysis/about.Rmd
    Modified:   analysis/index.Rmd

Note that any generated files, e.g. HTML, png, CSS, etc., are not included in this status report because it is ok for generated content to have uncommitted changes.

These are the previous versions of the R Markdown and HTML files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view them.

File Version Author Date Message
html 163892b Bryan 2020-02-01 Build site.
Rmd 6466781 Bryan 2020-02-01 update title per proof edit
html c50009c Bryan 2020-02-01 Build site.
Rmd a1d2e7b Bryan 2020-01-24 update with documentation
html a1d2e7b Bryan 2020-01-24 update with documentation
Rmd af2a4c1 Bryan 2019-12-30 all updates after co-author review; edits to tables/figs; ID75
html af2a4c1 Bryan 2019-12-30 all updates after co-author review; edits to tables/figs; ID75
html 6021a9c Bryan Mayer 2019-04-08 Build site.
html 37f0c94 Bryan Mayer 2019-04-08 Build site.
html 2f57367 Bryan Mayer 2019-04-08 Build site.
html 5af6494 Bryan Mayer 2019-03-21 Build site.
Rmd 510405b Bryan Mayer 2019-03-21 wflow_git_commit(all = T)
Rmd bdcc098 Bryan Mayer 2019-03-19 Start workflowr project.

Estimating the Risk of Human Herpesvirus 6 and Cytomegalovirus Transmission to Ugandan Infants from Viral Shedding in Saliva by Household Contacts.

This article was published in Viruses and the pdf is available there.

Citation: Mayer, B.T.; Krantz, E.M.; Wald, A.; Corey, L.; Casper, C.; Gantt, S.; Schiffer, J.T. Estimating the Risk of Human Herpesvirus 6 and Cytomegalovirus Transmission to Ugandan Infants from Viral Shedding in Saliva by Household Contacts. Viruses 2020, 12, 171.

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